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Since sbl-eh4-rp1 overlooked the fact there was *already* a "missing newline" section, merge them and mark in BIG LETTERS. And other stuff.
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== How can I read a file (data stream, variable) line-by-line? == |
== How can I read a file (data stream, variable) line-by-line (and/or field-by-field)? == |
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The `-r` option to read prevents backslash interpretation (usually used as a backslash newline pair, to continue over multiple lines). Without this option, any backslashes in the input will be discarded. You should always use the `-r` option with read. [[BASH]] can also iterate over the lines in a variable using a "here string": |
The `-r` option to `read` prevents backslash interpretation (usually used as a backslash newline pair, to continue over multiple lines). Without this option, any backslashes in the input will be discarded. You should always use the `-r` option with read. `line` is a variable name, chosen by you. You can use any valid shell variable name there. If avoiding comments starting with `#` is desired {{{ while read -r line do [[ $line = \#* ]] && continue echo "$line" done < "$file" }}} If your input source is the script's standard input, then you don't need any redirection at all. If your input source is the contents of a variable/parameter, [[BASH]] can iterate over its lines using a "here string": |
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If your data source is the script's standard input, then you don't need any redirection at all. | The same can be done in any Bourne-type shell by using a "here document" (although `read -r` is POSIX, not Bourne): {{{ while read -r line; do echo "$line" done <<EOF $var EOF }}} |
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If the field delimiters are not whitespace, you can set {{{IFS}}} (input field separator): | If the field delimiters are not whitespace, you can set [[IFS|IFS (internal field separator)]]: |
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For TAB delimited files, use IFS=$'\t'. | For TAB delimited files, use [[Quotes|IFS=$'\t']]. |
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The {{{read}}} command modifies each line read, e.g. by default it removes all leading whitespace characters (blanks, tab characters, ... -- basically any leading characters present in IFS). If that is not desired, the {{{IFS}}} variable has to be cleared: | Some people use the throwaway variable `_` as a "junk variable" to ignore fields. It (or indeed any variable) can also be used more than once in a single `read` command, if we don't care what goes into it: {{{ read -r _ _ first middle last _ <<< "$record" # Remember, the final _ can absorb any number of fields. # It doesn't need to be repeated there. }}} The {{{read}}} command modifies each line read; by default it removes all leading whitespace characters (blanks, tab characters, ... -- any whitespace characters present in [[IFS]]). If that is not desired, the {{{IFS}}} variable has to be cleared: |
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'''Note that reading a file line by line this way is ''very slow'' for large files. Consider using e.g. [[AWK]] instead if you get performance problems.''' | |
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This method is especially useful for processing the output of `find` with a block of commands: {{{ find . -print0 | while IFS= read -r -d $'\0' file; do |
This method is especially useful for processing the output of [[UsingFind|find]] with a block of commands: {{{ find . -print0 | while IFS= read -r -d '' file; do |
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This command reads one filename at a time from the file command and renames the file so that its spaces are replaced by underscores. Note the usage of {{{-print0}}} in the find command, which uses NUL bytes as filename delimiters, and {{{-d $'\0'}}} in the read command to instruct it to read all text into the file variable until it finds a NUL byte. By default, `find` and `read` delimit their input with newlines; however, since filenames can potentially contain newlines themselves, this default behaviour will split up those filenames with newlines and cause the loop body to fail. Additionally it is necessary to unset IFS, because otherwise read would strip trailing whitespace. See [[BashFAQ/020|FAQ #20]] for more details. Using a pipe to send find's output into a while loop places the loop in a SubShell and may therefore cause problems later on if the commands inside the body of the loop attempt to set variables which need to be used outside the loop; in that case, see [[BashFAQ/024|FAQ 24]], or use ProcessSubstitution like: |
This reads one filename at a time from the find command and renames the file, replacing spaces with underscores. Note the usage of {{{-print0}}} in the `find` command, which uses NUL bytes as filename delimiters, and {{{-d ''}}} in the `read` command to instruct it to read all text into the `file` variable until it finds a NUL byte. By default, `find` and `read` delimit their input with newlines; however, since filenames can potentially contain newlines themselves, this default behaviour will split up those filenames with newlines and cause the loop body to fail. Additionally it is necessary to set `IFS` to an empty string, because otherwise read would strip leading and trailing whitespace. See [[BashFAQ/020|FAQ #20]] for more details. Using a pipe to send `find`'s output into a while loop places the loop in a SubShell and may therefore cause problems later on if the commands inside the body of the loop attempt to set variables which need to be used outside the loop; in that case, see [[BashFAQ/024|FAQ 24]], or use ProcessSubstitution like: |
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Sometimes it's useful to read a file into an [[BashFAQ/005|array]], one array element per line. You can do that with the following example: {{{ oIFS=$IFS IFS=$'\n' arr=($(< myfile)) IFS=$oIFS # Warning: breaks if lines contain "*" or similar }}} This temporarily changes the Input Field Separator to a newline, so that each line will be considered one field by read. Then it populates the array {{{arr}}} with the fields. Then it sets the {{{IFS}}} back to what it was before. This same trick works on a stream of data as well as a file: {{{ oIFS=$IFS IFS=$'\n' arr=($(find . -type f)) IFS=$oIFS # Same warning as the previous example }}} Of course, this will blow up in your face if the filenames contain newlines; see [[BashFAQ/020|FAQ 20]] for hints on dealing with such filenames. Both of these array-stuffing examples fail if the shell encounters a [[glob]] that matches files in the current directory as one of the input lines. Glob expansion can be disabled with `set -f` and then re-enabled afterward with `set +f` if needed. For more details on arrays, see [[BashFAQ/005|FAQ 5]]. Moreover, since bash will treat sequences of IFS whitespace as a single character, if the input has empty lines (meaning that groups of two or more consecutive \n characters appear in the file), they will be lost. So, for example: {{{ $ cat myfile line1 line2 line3 $ oIFS=$IFS IFS=$'\n' arr=($(< myfile)) IFS=$oIFS $ declare -p arr declare -a arr='([0]="line1" [1]="line2" [2]="line3")' }}} In the end, the safest way to read a file into an array is still to use a loop: {{{ i=0 while IFS= read -r arr[i++]; do :;done < "$file" # or <<< "$var" to iterate over a variable }}} On the other hand, if the file lacks a trailing newline (such as {{{/proc/$$/cmdline}}} on Linux), the line will not be printed by a {{{while read ...}}} loop, as {{{read}}} returns a failure that aborts the while loop, thus failing to print the ultimate line. It does, however, store the contents of the partial line in the variable, so you can test whether there was such an unterminated line by checking whether the variable is non-empty at the end of the loop: |
If you want to read a file into an [[BashFAQ/005|array]], see [[BashFAQ/005|FAQ 5]]. === My text files are broken! They lack their final newlines! === If there are some characters after the last line in the file (or to put it differently, if the last line is not terminated by a newline character), then `read` will read it but return false, leaving the broken partial line in the `read` variable(s). You can process this after the loop: {{{ while IFS= read -r line do printf '%s\n' "$line" done < "$file" [ -n "$line" ] && printf %s "$line" }}} Or: |
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echo -en 'line 1\ntruncated line 2' | while read -r line; do echo $line; done | printf 'line 1\ntruncated line 2' | while read -r line; do echo $line; done |
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echo -en 'line 1\ntruncated line 2' | while read -r line; do echo "$line"; done; [[ $line ]] && echo -n "$line" | printf 'line 1\ntruncated line 2' | while read -r line; do echo "$line"; done; [[ $line ]] && echo -n "$line" |
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echo -en 'line 1\ntruncated line 2' | (while read -r line; do echo "$line"; done; [[ $line ]] && echo "$line") | printf 'line 1\ntruncated line 2' | (while read -r line; do echo "$line"; done; [[ $line ]] && echo "$line") |
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Using {{{for}}} instead of {{{while read ...}}} is generally less efficient and more "featureful": | === How to keep other commands from "eating" the input === Some commands greedily eat up all available data on standard input. The examples above do not take precautions against such programs. For example, {{{ while read -r line do cat > ignoredfile echo "$line" done < "$file" }}} will only print the contents of the first line, with the remaining contents going to "ignoredfile", as `cat` slurps up all available input. One workaround is to use a numeric file descriptor rather than standard input: {{{ # Bash exec 9< "$file" while read -r -u9 line do cat > ignoredfile echo "$line" done exec 9<&- }}} Or: {{{ # Bourne exec 9< "$file" while read line <&9 do ... done exec 9<&- }}} This example will wait for the user to type something into the file {{{ignoredfile}}} at each iteration instead of eating up the loop input. You might need this, for example, with `mencoder` which will accept user input if there is any, but will continue silently if there isn't. Other commands that act this way include `ssh` and `ffmpeg`. Additional workarounds for this are discussed in [[BashFAQ/089|FAQ #89]]. === Why you don't use "for" for this === Using {{{for}}} instead of {{{while read ...}}} is generally less efficient and suffers a number of unexpected side-effects. |
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$ while read i ; do echo "$i" ; done < afile | $ while read -r i ; do echo "$i" ; done < afile |
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$ IFS=$'\n' ;set -f ; for i in $(<afile) ; do echo "$i" ; done | $ oIFS=$IFS IFS=$'\n' ;set -f ; for i in $(<afile) ; do echo "$i" ; done; IFS=$oIFS |
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}}} |
}}} Notice that the syntax to get this "right" is more verbose. All-in-all, (ab)using {{{for}}} this way is a more dangerous, less intuitive (you don't get what you expect out of a normal {{{for}}}!) and not any more useful method. Also, as discussed in [[BashFAQ/005|FAQ #5]], the use of `IFS=$'\n'` (or any other "whitespace" in `IFS`) causes the shell to consolidate all consecutive instances of the whitespace delimiter into one. In other words, it skips over blank lines. Did you see the blank line in the input file, and how it was missing in the output? It's easier to spot if it's not at the end: {{{ ~$ cat foo line one line three ~$ IFS=$'\n'; set -f; for line in $(<foo); do echo "$line"; done; unset IFS; set +f line one line three ~$ }}} All that setting and unsetting, and we ''still'' couldn't even mimic a simple `cat`. If preservation of blank lines is important, just go back to using `while read`. ---- CategoryShell |
How can I read a file (data stream, variable) line-by-line (and/or field-by-field)?
Use a while loop and the read command:
while read -r line do echo "$line" done < "$file"
The -r option to read prevents backslash interpretation (usually used as a backslash newline pair, to continue over multiple lines). Without this option, any backslashes in the input will be discarded. You should always use the -r option with read.
line is a variable name, chosen by you. You can use any valid shell variable name there.
If avoiding comments starting with # is desired
while read -r line do [[ $line = \#* ]] && continue echo "$line" done < "$file"
If your input source is the script's standard input, then you don't need any redirection at all.
If your input source is the contents of a variable/parameter, BASH can iterate over its lines using a "here string":
while read -r line; do echo "$line" done <<< "$var"
The same can be done in any Bourne-type shell by using a "here document" (although read -r is POSIX, not Bourne):
while read -r line; do echo "$line" done <<EOF $var EOF
If you want to operate on individual fields within each line, you may supply additional variables to read:
# Input file has 3 columns separated by white space. while read -r first_name last_name phone; do ... done < "$file"
If the field delimiters are not whitespace, you can set IFS (internal field separator):
while IFS=: read -r user pass uid gid gecos home shell; do ... done < /etc/passwd
For TAB delimited files, use IFS=$'\t'.
Also, please note that you do not necessarily need to know how many fields each line of input contains. If you supply more variables than there are fields, the extra variables will be empty. If you supply fewer, the last variable gets "all the rest" of the fields after the preceding ones are satisfied. For example,
while read -r first_name last_name junk; do ... done <<< 'Bob Smith 123 Main Street Elk Grove Iowa 123-555-6789' # Inside the loop, first_name will contain "Bob", and # last_name will contain "Smith". The variable "junk" holds # everything else.
Some people use the throwaway variable _ as a "junk variable" to ignore fields. It (or indeed any variable) can also be used more than once in a single read command, if we don't care what goes into it:
read -r _ _ first middle last _ <<< "$record" # Remember, the final _ can absorb any number of fields. # It doesn't need to be repeated there.
The read command modifies each line read; by default it removes all leading whitespace characters (blanks, tab characters, ... -- any whitespace characters present in IFS). If that is not desired, the IFS variable has to be cleared:
while IFS= read -r line do echo "$line" done < "$file"
One may also read from a command instead of a regular file:
some command | while read -r line; do other commands done
This method is especially useful for processing the output of find with a block of commands:
find . -print0 | while IFS= read -r -d '' file; do mv "$file" "${file// /_}" done
This reads one filename at a time from the find command and renames the file, replacing spaces with underscores.
Note the usage of -print0 in the find command, which uses NUL bytes as filename delimiters, and -d '' in the read command to instruct it to read all text into the file variable until it finds a NUL byte. By default, find and read delimit their input with newlines; however, since filenames can potentially contain newlines themselves, this default behaviour will split up those filenames with newlines and cause the loop body to fail. Additionally it is necessary to set IFS to an empty string, because otherwise read would strip leading and trailing whitespace. See FAQ #20 for more details.
Using a pipe to send find's output into a while loop places the loop in a SubShell and may therefore cause problems later on if the commands inside the body of the loop attempt to set variables which need to be used outside the loop; in that case, see FAQ 24, or use ProcessSubstitution like:
while read -r line; do other commands done < <(some command)
If you want to read a file into an array, see FAQ 5.
My text files are broken! They lack their final newlines!
If there are some characters after the last line in the file (or to put it differently, if the last line is not terminated by a newline character), then read will read it but return false, leaving the broken partial line in the read variable(s). You can process this after the loop:
while IFS= read -r line do printf '%s\n' "$line" done < "$file" [ -n "$line" ] && printf %s "$line"
Or:
# This does not work: printf 'line 1\ntruncated line 2' | while read -r line; do echo $line; done # This does not work either: printf 'line 1\ntruncated line 2' | while read -r line; do echo "$line"; done; [[ $line ]] && echo -n "$line" # This works: printf 'line 1\ntruncated line 2' | (while read -r line; do echo "$line"; done; [[ $line ]] && echo "$line")
For a discussion of why the second example above does not work as expected, see FAQ #24.
How to keep other commands from "eating" the input
Some commands greedily eat up all available data on standard input. The examples above do not take precautions against such programs. For example,
while read -r line do cat > ignoredfile echo "$line" done < "$file"
will only print the contents of the first line, with the remaining contents going to "ignoredfile", as cat slurps up all available input.
One workaround is to use a numeric file descriptor rather than standard input:
# Bash exec 9< "$file" while read -r -u9 line do cat > ignoredfile echo "$line" done exec 9<&-
Or:
# Bourne exec 9< "$file" while read line <&9 do ... done exec 9<&-
This example will wait for the user to type something into the file ignoredfile at each iteration instead of eating up the loop input.
You might need this, for example, with mencoder which will accept user input if there is any, but will continue silently if there isn't. Other commands that act this way include ssh and ffmpeg. Additional workarounds for this are discussed in FAQ #89.
Why you don't use "for" for this
Using for instead of while read ... is generally less efficient and suffers a number of unexpected side-effects.
$ cat afile ef gh * $ while read -r i ; do echo "$i" ; done < afile ef gh * $ for i in $(<afile) ; do echo "$i" ; done ef gh afile # the glob was expanded, and it looped per word. #workaround: $ oIFS=$IFS IFS=$'\n' ;set -f ; for i in $(<afile) ; do echo "$i" ; done; IFS=$oIFS ef gh *
Notice that the syntax to get this "right" is more verbose. All-in-all, (ab)using for this way is a more dangerous, less intuitive (you don't get what you expect out of a normal for!) and not any more useful method.
Also, as discussed in FAQ #5, the use of IFS=$'\n' (or any other "whitespace" in IFS) causes the shell to consolidate all consecutive instances of the whitespace delimiter into one. In other words, it skips over blank lines. Did you see the blank line in the input file, and how it was missing in the output? It's easier to spot if it's not at the end:
~$ cat foo line one line three ~$ IFS=$'\n'; set -f; for line in $(<foo); do echo "$line"; done; unset IFS; set +f line one line three ~$
All that setting and unsetting, and we still couldn't even mimic a simple cat. If preservation of blank lines is important, just go back to using while read.